In The Clone Wars (as well as the canon as a whole), most Jedi and clones tend to have a much healthier relationship, with the Jedi treating the clones with respect and encouraging their individuality, and both parties are shown to greatly trust one another, though this sentiment is not universal for Jedi or clones alike. As such, while they fought along with one another, it often leaned towards Teeth-Clenched Teamwork, and many clones had little issue with executing the Jedi they served with, though not all followed through with it. In the former, their relationship was much more uneasy, mainly due to Jedi viewing the clones' Blind Obedience and My Country, Right or Wrong mentality with weariness, while clones disliked the dismissive way they were viewed and how many had died under their Jedi Commanders' watch. Clones and Jedi's relationship in Legends differ a great deal compared to The Clone Wars (and by extension the canon).Thus, clones that have just graduated from training are dubbed 'shinies' due to their clean, still pristine white armor. Ace Custom: A rite of passage of sorts for clones was to customize their armor, with different paintjobs and gear.By the time of the Battle of Endor, most clones were either dead from old age or senile, and mostly forgotten by the galaxy. While many clones continued to serve the Empire for at least five more years, they were eventually eclipsed by ordinary human soldiers, with the clones eventually becoming a rare sight even in the Stormtrooper Corps. Shortly after the end of the war, the Galactic Empire mandated the cessation of clone production due to its high cost compared to simply training conscripts and volunteers. With few exceptions - mainly among genetically defective, brain-damaged, or otherwise modified clones - this order was carried out to the letter.

However, unbeknownst to all but the Kaminoan cloners and certain conspirators in the Republic, the clone troopers were also implanted with mental inhibitor chips that, when activated by the code phrase 'Execute Order 66', caused them to kill their Jedi commanders and unquestioningly obey the orders of Chancellor-turned-Emperor Sheev Palpatine.

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